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Welcome to eMZed

Develop LCMS data analysis workflows the easy way

eMZed is an open source toolbox for rapid and interactive development of LCMS data analysis workflows in Python.

binderhub

Example

import emzed

peak_map = emzed.io.load_peakmap("test.mzML")
peaks = emzed.run_feature_finder_metabo(
    peak_map,
    mtd_noise_threshold_int=10000,
)

emzed.gui.inspect(peaks)

For more examples, see the tutorials section and the more advanded example workflow repository.