Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U

_

__getitem__() (emzed.core.data_types.table.Table method)
__getstate__() (emzed.core.data_types.table.Table method)
__iadd__() (emzed.core.data_types.expressions.ColumnExpression method)
__idiv__() (emzed.core.data_types.expressions.ColumnExpression method)
__imul__() (emzed.core.data_types.expressions.ColumnExpression method)
__init__() (emzed.core.data_types.ms_types.PeakMap method)
(emzed.core.data_types.ms_types.Spectrum method)
__isub__() (emzed.core.data_types.expressions.ColumnExpression method)
__iter__() (emzed.core.data_types.table.Table method)
__setstate__() (emzed.core.data_types.table.Table method)

A

addColumn() (emzed.core.data_types.table.Table method)
addConstantColumn() (emzed.core.data_types.table.Table method)
addEnumeration() (emzed.core.data_types.table.Table method)
addmf() (in module emzed.utils)
addRow() (emzed.core.data_types.table.Table method)
aggregate() (emzed.core.data_types.expressions.BaseExpression method)
allFalse (emzed.core.data_types.expressions.BaseExpression attribute)
allNone (emzed.core.data_types.expressions.BaseExpression attribute)
allRts() (emzed.core.data_types.ms_types.PeakMap method)
allTrue (emzed.core.data_types.expressions.BaseExpression attribute)
anyFalse (emzed.core.data_types.expressions.BaseExpression attribute)
anyNone (emzed.core.data_types.expressions.BaseExpression attribute)
anyTrue (emzed.core.data_types.expressions.BaseExpression attribute)
append() (emzed.core.data_types.table.Table method)
appendTable() (emzed.core.data_types.table.Table method)
apply() (emzed.core.data_types.expressions.BaseExpression method)
(emzed.core.data_types.table.Table method)
approxEqual() (emzed.core.data_types.expressions.BaseExpression method)
askForDirectory() (in module emzed.gui)
askForMultipleFiles() (in module emzed.gui)
askForSave() (in module emzed.gui)
askForSingleFile() (in module emzed.gui)
attach_ms2_spectra() (in module emzed.utils)

B

BaseExpression (class in emzed.core.data_types.expressions)
buildEmptyClone() (emzed.core.data_types.table.Table method)

C

callMethod() (emzed.core.data_types.expressions.BaseExpression method)
chromatogram() (emzed.core.data_types.ms_types.PeakMap method)
cleaned() (emzed.core.data_types.ms_types.PeakMap method)
cleanupPostfixes() (emzed.core.data_types.table.Table method)
collapse() (emzed.core.data_types.table.Table method)
ColumnExpression (class in emzed.core.data_types.expressions)
compressPeakMaps() (emzed.core.data_types.table.Table method)
compute_alignments() (emzed.core.data_types.ms_types.Spectrum static method)
contains() (emzed.core.data_types.expressions.BaseExpression method)
containsElement() (emzed.core.data_types.expressions.BaseExpression method)
containsOnlyElements() (emzed.core.data_types.expressions.BaseExpression method)
copy() (emzed.core.data_types.table.Table method)
cosine_distance() (emzed.core.data_types.ms_types.Spectrum method)
count (emzed.core.data_types.expressions.BaseExpression attribute)
count_different (emzed.core.data_types.expressions.BaseExpression attribute)
countNone (emzed.core.data_types.expressions.BaseExpression attribute)
countNotNone (emzed.core.data_types.expressions.BaseExpression attribute)

D

DialogBuilder (class in emzed.gui)
dropColumns() (emzed.core.data_types.table.Table method)

E

emzed.abundance (module)
emzed.adducts (module)
emzed.core.data_types.expressions (module)
emzed.elements (module)
emzed.mass (module)
ensureColNames() (emzed.core.data_types.table.Table method)
enumerateBy() (emzed.core.data_types.table.Table method)
equals() (emzed.core.data_types.expressions.BaseExpression method)
extract() (emzed.core.data_types.ms_types.PeakMap method)
extractColumns() (emzed.core.data_types.table.Table method)

F

fastJoin() (emzed.core.data_types.table.Table method)
fastLeftJoin() (emzed.core.data_types.table.Table method)
filter() (emzed.core.data_types.ms_types.PeakMap method)
(emzed.core.data_types.table.Table method)
filterIntensity() (emzed.core.data_types.ms_types.PeakMap method)
findMatchingRows() (emzed.core.data_types.table.Table method)
findPostfixes() (emzed.core.data_types.table.Table method)
formula() (in module emzed.utils)
formulaTable() (in module emzed.utils)
from_numpy_array() (emzed.core.data_types.table.Table static method)
from_pandas() (emzed.core.data_types.table.Table static method)
fromMSExperiment() (emzed.core.data_types.ms_types.PeakMap class method)
fromMSSpectrum() (emzed.core.data_types.ms_types.Spectrum class method)

G

getColFormat() (emzed.core.data_types.table.Table method)
getColFormats() (emzed.core.data_types.table.Table method)
getColNames() (emzed.core.data_types.table.Table method)
getColType() (emzed.core.data_types.table.Table method)
getColTypes() (emzed.core.data_types.table.Table method)
getColumn() (emzed.core.data_types.table.Table method)
getFormat() (emzed.core.data_types.table.Table method)
getIndex() (emzed.core.data_types.table.Table method)
getMsLevels() (emzed.core.data_types.ms_types.PeakMap method)
getType() (emzed.core.data_types.table.Table method)
getValue() (emzed.core.data_types.table.Table method)
getValues() (emzed.core.data_types.table.Table method)
getVisibleCols() (emzed.core.data_types.table.Table method)

H

hasColumn() (emzed.core.data_types.table.Table method)
hasColumns() (emzed.core.data_types.table.Table method)
hasNone (emzed.core.data_types.expressions.BaseExpression attribute)

I

ifNotNoneElse() (emzed.core.data_types.expressions.BaseExpression method)
info() (emzed.core.data_types.table.Table method)
inRange() (emzed.core.data_types.expressions.BaseExpression method)
inspect() (in module emzed.gui)
inspectPeakMap() (in module emzed.gui)
integrate() (in module emzed.utils)
intensityInRange() (emzed.core.data_types.ms_types.Spectrum method)
isIn() (emzed.core.data_types.expressions.BaseExpression method)
isNone() (emzed.core.data_types.expressions.BaseExpression method)
isNotNone() (emzed.core.data_types.expressions.BaseExpression method)
isotopeDistributionTable() (in module emzed.utils)

J

join() (emzed.core.data_types.table.Table method)

K

kruskalWallis() (in module emzed.stats)
kruskalWallisOnTables() (in module emzed.stats)

L

leftJoin() (emzed.core.data_types.table.Table method)
len (emzed.core.data_types.expressions.BaseExpression attribute)
levelNSpecs() (emzed.core.data_types.ms_types.PeakMap method)
levelNSpecsInRange() (emzed.core.data_types.ms_types.PeakMap method)
levelOneRts() (emzed.core.data_types.ms_types.PeakMap method)
load() (emzed.core.data_types.table.Table static method)
loadCSV() (emzed.core.data_types.table.Table static method)
(in module emzed.io)
loadFileFromPath() (emzed.core.data_types.expressions.BaseExpression method)
loadPeakMap() (in module emzed.io)
loadTable() (in module emzed.io)

M

max (emzed.core.data_types.expressions.BaseExpression attribute)
maxIntensity() (emzed.core.data_types.ms_types.Spectrum method)
maxPostfix() (emzed.core.data_types.table.Table method)
mean (emzed.core.data_types.expressions.BaseExpression attribute)
median (emzed.core.data_types.expressions.BaseExpression attribute)
mergeTables() (emzed.core.data_types.table.Table static method)
(in module emzed.utils)
min (emzed.core.data_types.expressions.BaseExpression attribute)
minPostfix() (emzed.core.data_types.table.Table method)
modify() (emzed.core.data_types.expressions.ColumnExpression method)
msNPeaks() (emzed.core.data_types.ms_types.PeakMap method)
mzAlign() (in module emzed.align)
mzMax() (emzed.core.data_types.ms_types.Spectrum method)
mzMin() (emzed.core.data_types.ms_types.Spectrum method)
mzRange() (emzed.core.data_types.ms_types.PeakMap method)
(emzed.core.data_types.ms_types.Spectrum method)

N

numRows() (emzed.core.data_types.table.Table method)

O

oneWayAnova() (in module emzed.stats)
oneWayAnovaOnTables() (in module emzed.stats)
openInBrowser() (in module emzed.utils)

P

PeakMap (class in emzed.core.data_types.ms_types)
peaksInRange() (emzed.core.data_types.ms_types.Spectrum method)
plotIsotopeDistribution() (in module emzed.utils)
pow() (emzed.core.data_types.expressions.BaseExpression method)
print_() (emzed.core.data_types.table.Table method)

R

recalculateMzPeaks() (in module emzed.utils)
removePostfixes() (emzed.core.data_types.table.Table method)
renameColumns() (emzed.core.data_types.table.Table method)
renamePostfixes() (emzed.core.data_types.table.Table method)
replaceColumn() (emzed.core.data_types.table.Table method)
replaceSelectedRows() (emzed.core.data_types.table.Table method)
representingMzPeak() (emzed.core.data_types.ms_types.PeakMap method)
requireColumn() (emzed.core.data_types.table.Table method)
resetInternals() (emzed.core.data_types.table.Table method)
rtAlign() (in module emzed.align)
rtRange() (emzed.core.data_types.ms_types.PeakMap method)
runCentwave() (in module emzed.batches)
(in module emzed.ff)
runMatchedFilter() (in module emzed.batches)
runMatchedFilters() (in module emzed.ff)
runMetaboFeatureFinder() (in module emzed.batches)
(in module emzed.ff)
runPeakPickerHiRes() (in module emzed.batches)

S

sample_peaks() (emzed.core.data_types.ms_types.PeakMap method)
setCellValue() (emzed.core.data_types.table.Table method)
setColFormat() (emzed.core.data_types.table.Table method)
setColType() (emzed.core.data_types.table.Table method)
setRow() (emzed.core.data_types.table.Table method)
setValue() (emzed.core.data_types.table.Table method)
shiftRt() (emzed.core.data_types.ms_types.PeakMap method)
showInformation() (in module emzed.gui)
showWarning() (in module emzed.gui)
sortPermutation() (emzed.core.data_types.table.Table method)
specsInRange() (emzed.core.data_types.ms_types.PeakMap method)
Spectrum (class in emzed.core.data_types.ms_types)
splitBy() (emzed.core.data_types.table.Table method)
splitByIter() (emzed.core.data_types.table.Table method)
splitLevelN() (emzed.core.data_types.ms_types.PeakMap method)
splitVertically() (emzed.core.data_types.table.Table method)
squeeze() (emzed.core.data_types.ms_types.PeakMap method)
stackTables() (emzed.core.data_types.table.Table static method)
(in module emzed.utils)
startfile() (in module emzed.utils)
startswith() (emzed.core.data_types.expressions.BaseExpression method)
std (emzed.core.data_types.expressions.BaseExpression attribute)
store() (emzed.core.data_types.table.Table method)
storeCSV() (emzed.core.data_types.table.Table method)
(in module emzed.io)
storePeakMap() (in module emzed.io)
storeTable() (in module emzed.io)
sum (emzed.core.data_types.expressions.BaseExpression attribute)
supportedPostfixes() (emzed.core.data_types.table.Table method)

T

Table (class in emzed.core.data_types.table)
thenElse() (emzed.core.data_types.expressions.BaseExpression method)
to_pandas() (emzed.core.data_types.table.Table method)
toMSExperiment() (emzed.core.data_types.ms_types.PeakMap method)
toMSSpectrum() (emzed.core.data_types.ms_types.Spectrum method)
toOpenMSFeatureMap() (emzed.core.data_types.table.Table method)
toTable() (emzed.core.data_types.expressions.BaseExpression method)
(emzed.core.data_types.table.Table static method)
(in module emzed.utils)
transformColumnNames() (emzed.core.data_types.table.Table method)

U

uniqueNotNone (emzed.core.data_types.expressions.BaseExpression attribute)
uniqueRows() (emzed.core.data_types.table.Table method)