emzed.ms_data.peak_map module¶
- class emzed.ms_data.peak_map.BoundSpectrum(parent, scan_number)[source]¶
Bases:
object
- intensities¶
Property which fetches / updated value from/to db table on demand
- ms_level¶
Property which fetches / updated value from/to db table on demand
- mzs¶
Property which fetches / updated value from/to db table on demand
- peaks¶
Property which fetches / updated value from/to db table on demand
- polarity¶
Property which fetches / updated value from/to db table on demand
- property precursors¶
- rt¶
Property which fetches / updated value from/to db table on demand
- property scan_number¶
- class emzed.ms_data.peak_map.ChromatogramType(value)[source]¶
Bases:
Enum
An enumeration.
- ABSORPTION_CHROMATOGRAM = 7¶
- BASEPEAK_CHROMATOGRAM = 3¶
- ELECTROMAGNETIC_RADIATION_CHROMATOGRAM = 6¶
- EMISSION_CHROMATOGRAM = 8¶
- MASS_CHROMATOGRAM = 0¶
- SELECTED_ION_CURRENT_CHROMATOGRAM = 2¶
- SELECTED_ION_MONITORING_CHROMATOGRAM = 4¶
- SELECTED_REACTION_MONITORING_CHROMATOGRAM = 5¶
- TOTAL_ION_CURRENT_CHROMATOGRAM = 1¶
- class emzed.ms_data.peak_map.DbBackedProperty(get_function, set_function=None)[source]¶
Bases:
object
Property which fetches / updated value from/to db table on demand
- class emzed.ms_data.peak_map.ImmutablePeakMap(conn, access_name, meta_data=None, info=None)[source]¶
Bases:
DbBackedModel
- chromatogram(mzmin=None, mzmax=None, rtmin=None, rtmax=None, ms_level=None, precursormzmin=None, precursormzmax=None)[source]¶
- extract(mzmin=None, mzmax=None, rtmin=None, rtmax=None, imin=None, imax=None, mslevelmin=None, mslevelmax=None, precursormzmin=None, precursormzmax=None, *, target_db_file=None)[source]¶
- property unique_id¶
- class emzed.ms_data.peak_map.ImmutableSpectra(peakmap, is_mutable=False)[source]¶
Bases:
SpectraBase
- class emzed.ms_data.peak_map.MSChromatogram(mz, precursor_mz, rts, intensities, type_)[source]¶
Bases:
object
- property available_types¶
- property intensities¶
- property mz¶
- property precursor_mz¶
- property rts¶
- property type¶
- class emzed.ms_data.peak_map.MutableSpectra(peakmap)[source]¶
Bases:
ImmutableSpectra
- class emzed.ms_data.peak_map.PeakMap(conn, access_name, meta_data, info)[source]¶
Bases:
ImmutablePeakMap
- class emzed.ms_data.peak_map.Spectrum(scan_number, rt, ms_level, polarity, precursors, peaks)[source]¶
Bases:
object
- emzed.ms_data.peak_map.chromatogram(conn, access_name, mzmin, mzmax, rtmin, rtmax, ms_level, precursormzmin, precursormzmax)[source]¶
- emzed.ms_data.peak_map.db_backed_property¶
alias of
DbBackedProperty
- emzed.ms_data.peak_map.insert_chromatogram(conn, access_name, mz, precursor_mz, peaks, type_)[source]¶
- emzed.ms_data.peak_map.insert_peaks(conn, access_name, peaks, rt, ms_level, polarity, precursors, scan_number)[source]¶