emzed.peak_picking.run_feature_finder_metabo_on_folder module

emzed.peak_picking.run_feature_finder_metabo_on_folder.run_feature_finder_metabo_on_folder(in_folder, file_patterns=None, out_folder=None, ms_level=None, n_cores=1, verbose=False, run_feature_grouper=True, split_by_precursor_mz_tol=0.0, overwrite=False, **parameters)[source]

runs feature_finder_metabo on all files in given folder matching providedfile_extension and saves the resulting table in out_folder.

Parameters:

  • in_folder – input folder, must exist.

  • file_patterns – list of file patterns. if not specified use [”.mzML”, “.mzXML”].

  • out_folder – output folder, not required to exist, will be created on demand. Default: out_folder = in_folder.

  • ms_level – optional ms level to be used for peak picking.

  • n_cores – run feature finding on n_cores in parallel.

  • verbose – set to True for verbose output.

  • parameters – check help(run_feature_finder_metabo) for details.

Returns:

None.