Publications using emzed¶

• Sprenger et al. Ergothioneine controls mitochondrial function and exercise performance via direct activation of MPST. Cell Metabolism (2025), https://doi.org/10.1016/j.cmet.2025.01.024

• Li et al. Oncogenic TFE3 fusions drive OXPHOS and confer metabolic vulnerabilities in translocation renal cell carcinoma. Nature Metabolism (2025), https://doi.org/10.1038/s42255-025-01218-9

• Mori et al. Mitochondrial membrane hyperpolarization modulates nuclear DNA methylation and gene expression through phospholipid remodeling. Nature Communications (2025), https://doi.org/10.1038/s41467-025-59427-5

• Reiter et al. A synthetic methylotrophic Escherichia coli as a chassis for bioproduction from methanol. Nature Catalysis (2024), https://doi.org/10.1038/s41929-024-01137-0

• Langston et al. Regulatory T cells shield muscle mitochondria from interferon-γ–mediated damage to promote the beneficial effects of exercise. Science Immmunology (2023), https://doi.org/10.1126/sciimmunol.adi5377

• Keller, Reiter et al. Generation of an Escherichia coli strain growing on methanol via the ribulose monophosphate cycle. Nature Communications (2022), https://doi.org/10.1038/s41467-022-32744-9

• Ryback et al. Metabolic adaptation to vitamin auxotrophy by leaf-associated bacteria. The ISME Journal (2022), https://doi.org/10.1038/s41396-022-01303-x

• Bidong D. Nguyen et al. Import of Aspartate and Malate by DcuABC Drives H2/Fumarate Respiration to Promote Initial Salmonella Gut-Lumen Colonization in Mice. Cell Host & Microbe (2020), https://doi.org/10.1016/j.chom.2020.04.013

• Hartl et al. Untargeted metabolomics links glutathione to bacterial cell cycle progression. Nature Metabolism (2020), https://doi.org/10.1038/s42255-019-0166-0

• Hemmann et al. Methylofuran is a prosthetic group of the formyltransferase/hydrolase complex and shuttles one-carbon units between two active sites. PNAS (2019), https://doi.org/10.1073/pnas.1911595116

• Rosenthal et al. A conserved threonine prevents self-intoxication of enoyl-thioester reductases. Nature Chemical Biology (2018), https://dx.doi.org/10.1038%2Fnchembio.2375

• Guillaume-Gentil et al. Single-Cell Mass Spectrometry of Metabolites Extracted from Live Cells by Fluidic Force Microscopy. Analytical Chemistry (2017), https://doi.org/10.1021/acs.analchem.7b00367

• Hartl et al. Longevity of major coenzymes allows minimal de novo synthesis in microorganisms. Nature Microbiology (2017), http://dx.doi.org/10.1038/nmicrobiol.2017.73

• Hemmann et al. The One-carbon Carrier Methylofuran from Methylobacterium extorquens AM1 Contains a Large Number of Alpha- and Gamma-linked Glutamic Acid Residues. Journal of Biological Chemistry (2016), http://doi.org/10.1074/jbc.M116.714741

• Schwander et al. A synthetic pathway for the fixation of carbon dioxide in vitro. Science (2016), https://doi.org/10.1126/science.aah5237

• Peter et al. Screening and Engineering the Synthetic Potential of Carboxylating Reductases from Central Metabolism and Polyketide Biosynthesis. Angew Chem Int Ed Engl. (2015), https://doi.org/10.1002/anie.201505282

• Kiefer, Patrick, et al. DynaMet, a fully automated pipeline for dynamic LC-MS data. Analytical Chemistry (2015), https://doi.org/10.1021/acs.analchem.5b01660

• Ryffel, Florian, et al. Metabolic footprint of epiphytic bacteria on Arabidopsis thaliana leaves. The ISME journal (2015), https://doi.org/10.1038/ismej.2015.141

• Müller, Jonas EN, et al. Core pathways operating during methylotrophy of Bacillus methanolicus MGA3 and induction of a bacillithiol-dependent detoxification pathway upon formaldehyde stress. Molecular microbiology (2015), https://doi.org/10.1111/mmi.13200

• Müller, Jonas EN, et al. Engineering Escherichia coli for methanol conversion. Metabolic engineering 28 (2015), https://doi.org/10.1016/j.ymben.2014.12.008

• Wilson, Micheal C., et al. An environmental bacterial taxon with a large and distinct metabolic repertoire. Nature 506.7486 (2014), https://doi.org/10.1038/nature12959

• Erb, Kiefer, et al. GFAJ-1 is an arsenate-resistant, phosphate-dependent organism. Science (2012), https://doi.org/10.1126/science.1218455