emzed.r_connect.xcms_connector module

class emzed.r_connect.xcms_connector.CentwaveFeatureDetector(**kw)[source]

Bases: object

static install_xcms()[source]
is_xcms_installed()[source]
process(peak_map)[source]
standard_config = {'extendLengthMSW': False, 'firstBaselineCheck': False, 'fitgauss': False, 'integrate': 1, 'msLevel': None, 'mzCenterFun': 'wMean', 'mzdiff': -0.001, 'noise': 0, 'peakwidth': (20, 50), 'ppm': 25, 'prefilter': (3, 100), 'roiList': [], 'roiScales': [], 'snthresh': 10, 'verboseBetaColumns': False, 'verboseColumns': False}
emzed.r_connect.xcms_connector.get_r_version(rip)[source]
emzed.r_connect.xcms_connector.setup_r_libs_variable(rip)[source]